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		<title><![CDATA[Publications - Bermes Project]]></title>
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		<language><![CDATA[en]]></language>
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			<title><![CDATA[Publications - Bermes Project]]></title>
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			<link>http://bermesproject.eu/en/rss/publications/</link>
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			<item><title><![CDATA[A histomorphological atlas of resected mesothelioma discovered by self-supervised learning from 3446 whole-slide images.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/a-histomorphological-atlas-of-resected-mesothelioma-discovered-by-selfsupervised-learning-from-3446-wholeslide-images]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/a-histomorphological-atlas-of-resected-mesothelioma-discovered-by-selfsupervised-learning-from-3446-wholeslide-images]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Seyedshahi F, Rakovic K, Poulain N, Claudio Quiros A, Powley IR, Richards C, Uraiby H, Klebe S, Moore DA, Nakas A, Wilson CR, Sereno M, Officer-Jones L, Ficken C, Teodosio A, Ballantyne F, Murphy D, Yuan K, Le Quesne J</p>

<p>Nat Commun. Oct 2025</p>

<p>Mesothelioma is a highly lethal and poorly biologically understood disease which presents diagnostic challenges due to its morphological complexity. This study uses self-supervised AI (Artificial Intelligence) to map the histomorphological landscape of the disease. The resulting atlas consists of recurrent patterns identified from 3446 Hematoxylin and Eosin (H&amp;E) stained images scanned from resected tumour slides. These patterns generate highly interpretable predictions, achieving state-of-the-art performance with 0.65 concordance index (c-index) for outcomes and 88% AUC in subtyping. Their clinical relevance is endorsed by comprehensive human pathological assessment. Furthermore, we characterise the molecular underpinnings of these diverse, meaningful, predictive patterns. Our approach both improves diagnosis and deepens our understanding of mesothelioma biology, highlighting the power of this self-learning method in clinical applications and scientific discovery.</p>
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				<pubDate><![CDATA[Fri, 10 Oct 2025 15:14:29 +0200]]></pubDate>
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			<item><title><![CDATA[Efficacy and safety of bintrafusp alfa evaluated in a phase II single-arm clinical trial in previously treated advanced pleural mesothelioma.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/efficacy-and-safety-of-bintrafusp-alfa-evaluated-in-a-phase-ii-singlearm-clinical-trial-in-previously-treated-advanced-pleural-mesothelioma]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/efficacy-and-safety-of-bintrafusp-alfa-evaluated-in-a-phase-ii-singlearm-clinical-trial-in-previously-treated-advanced-pleural-mesothelioma]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Nadal E, Martín-Martorell P, Benítez JC, Sala MÁ, Cedrés S, Álvarez C, Dómine M, Sais E, Saigí M, López R, Vilà L, Massutí B, García-Campelo R, Mesas-Ruiz A, Insa A, Plans-Marín S, Hijazo-Pechero S, Muñoz-Pinedo C, Brenes J, Provencio M</p>

<p>Lung Cancer. May 2025. doi: 10.1016/j.lungcan.2025.108545S0169-5002(25)00437-4</p>

<p>We aimed to evaluate the efficacy (progression-free survival [PFS]) of bintrafusp alfa in patients with pleural mesothelioma (PM) who had progressed to platinum-based chemotherapy and had not previously received immunotherapy. We also assessed overall survival [OS], objective response rate [ORR], and safety and tolerability.This open-label, non-randomised, multicentre, phase II, single-arm clinical trial was carried out by the Spanish Lung Cancer Group between October 2021 and March 2023 in 15 Spanish hospitals. We included patients&nbsp;&ge;&nbsp;18&nbsp;years old, with an ECOG PS of 0 or 1, with a histologically confirmed unresectable or metastatic PM, and with a life expectancy of at least three months.46 patients were included in the analysis. Most patients were men (78.3&nbsp;%), the mean age was 70.0&nbsp;years (SD, 9.5), and most presented epithelioid PM (84.8&nbsp;%). The median PFS was 1.9&nbsp;months (95&nbsp;% CI, 1.7-3.2&nbsp;months), the median duration of bintrafusp alfa response was 3.8&nbsp;months, and the ORR was 6.5&nbsp;% (95&nbsp;% CI, 2.1-18.8&nbsp;%). The median OS was 11.9&nbsp;months (95&nbsp;% CI, 5.8-15.7&nbsp;months). Grade 3 or higher adverse events were observed in 34.8&nbsp;% of patients and no grade 5 adverse event was reported.Bintrafusp alfa did not reach the expected efficacy in patients with advanced PM. We did not identify new safety signals with bintrafusp alfa, and no case of bleeding was reported. Our study suggested that bintrafusp alfa has limited efficacy in PM, as reported in other solid tumours.</p>
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				<pubDate><![CDATA[Fri, 10 Oct 2025 14:42:38 +0200]]></pubDate>
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			<item><title><![CDATA[Antitumor Effect of Berberine Analogs in a Canine Mammary Tumor Cell Line and in Zebrafish Reporters via Wnt/β-Catenin and Hippo Pathways.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/antitumor-effect-of-berberine-analogs-in-a-canine-mammary-tumor-cell-line-and-in-zebrafish-reporters-via-wntcatenin-and-hippo-pathways]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/antitumor-effect-of-berberine-analogs-in-a-canine-mammary-tumor-cell-line-and-in-zebrafish-reporters-via-wntcatenin-and-hippo-pathways]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Sammarco A, Beffagna G, Sacchetto R, Vettori A, Bonsembiante F, Scarin G, Gelain ME, Cavicchioli L, Ferro S, Geroni C, Lombardi P, Zappulli V</p>

<p>Biomedicines. Dec 2023</p>

<p>The heterogeneous nature of human breast cancer (HBC) can still lead to therapy inefficacy and high lethality, and new therapeutics as well as new spontaneous animal models are needed to benefit translational HBC research. Dogs are primarily investigated since they spontaneously develop tumors that share many features with human cancers. In recent years, different natural phytochemicals including berberine, a plant alkaloid, have been reported to have antiproliferative activity in vitro in human cancers and rodent animal models. In this study, we report the antiproliferative activity and mechanism of action of berberine, its active metabolite berberrubine, and eight analogs, on a canine mammary carcinoma cell line and in transgenic zebrafish models. We demonstrate both in vitro and in vivo the significant effects of specific analogs on cell viability via the induction of apoptosis, also identifying their role in inhibiting the Wnt/β-catenin pathway and activating the Hippo signals with a downstream reduction in CTGF expression. In particular, the berberine analogs NAX035 and NAX057 show the highest therapeutic efficacy, deserving further analyses to elucidate their mechanism of action more in detail, and in vivo studies on spontaneous neoplastic diseases are needed, aiming at improving veterinary treatments of cancer as well as translational cancer research.</p>
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				<pubDate><![CDATA[Wed, 26 Jun 2024 20:24:18 +0200]]></pubDate>
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			<item><title><![CDATA[Berberine targets KIF20A and CCNE2 to inhibit the progression of nonsmall cell lung cancer via the PI3K/AKT pathway.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberine-targets-kif20a-and-ccne2-to-inhibit-the-progression-of-nonsmall-cell-lung-cancer-via-the-pi3kakt-pathway]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberine-targets-kif20a-and-ccne2-to-inhibit-the-progression-of-nonsmall-cell-lung-cancer-via-the-pi3kakt-pathway]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Wang Q, Wu H, Wu Q, Zhong S</p>

<p>Drug Dev Res. Aug 2023. doi: 10.1002/ddr.22061</p>

<p>Nonsmall cell lung cancer (NSCLC) is the main type of lung cancer, accounting for approximately 85%. Berberine (BBR), a commonly used traditional Chinese medicine, has been reported to exhibit a potential antitumor effect in various cancers. In this research, we explored the function of BBR and its underlying mechanisms in the development of NSCLC.Cell Counting Kit-8 (CCK-8), 5-ethynyl-20-deoxyuridine (EdU), colony formation assays, flow cytometry, and transwell invasion assay were employed to determine cell growth, the apoptotic rate, cell invasion of NSCLC cells, respectively. Western blot was applied for detecting the protein expression of c-Myc, matrix metalloprotease 9 (MMP9), kinesin family member 20A (KIF20A), cyclin E2 (CCNE2), and phosphatidylinositol-3-kinase/protein kinase B (PI3K/AKT) pathway-related proteins. Glycolysis was evaluated by detecting glucose consumption, lactate production, and adenosine triphosphate/adenosine diphosphate (ATP/ADP) ratio with the matched kits. Real-time quantitative polymerase&nbsp;chain reaction&nbsp;(RT-qPCR) was conducted to analyze the level of KIF20A and CCNE2. Tumor model was established to evaluate the function of BBR on tumor growth in NSCLC in vivo. In addition, immunohistochemistry assay was employed to detect the level of KIF20A, CCNE2, c-Myc, and MMP9 in mice tissues.BBR exhibited suppressive effects on the progression of NSCLC, as evidenced by inhibiting cell growth, invasion, glycolysis, and facilitating cell apoptosis in H1299 and A549 cells. KIF20A and CCNE2 were upregulated in NSCLC tissues and cells. Moreover, BBR treatment significantly decreased the expression of KIF20A and CCNE2. KIF20A or CCNE2 downregulation could repress cell proliferation, invasion, glycolysis, and induce cell apoptosis in both H1299 and A549 cells. The inhibition effects of BBR treatment on cell proliferation, invasion, glycolysis, and promotion effect on cell apoptosis were rescued by KIF20A or CCNE2 overexpression in NSCLC cells. The inactivation of PI3K/AKT pathway caused by BBR treatment in H1299 and A549 cells was restored by KIF20A or CCNE2 upregulation. In vivo experiments also demonstrated that BBR treatment could repress tumor growth by regulating KIF20A and CCNE2 and inactivating the PI3K/AKT pathway.BBR treatment showed the suppressive impact on the progression of NSCLC by targeting KIF20A and CCNE2, thereby inhibiting the activation of the PI3K/AKT pathway.</p>
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				<pubDate><![CDATA[Wed, 26 Jun 2024 20:23:14 +0200]]></pubDate>
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			<item><title><![CDATA[Berberine-mediated Ferroptosis through System Xc-/GSH/GPX4 Axis Inhibits Metastasis of Nasopharyngeal Carcinoma.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberinemediated-ferroptosis-through-system-xcgshgpx4-axis-inhibits-metastasis-of-nasopharyngeal-carcinoma]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberinemediated-ferroptosis-through-system-xcgshgpx4-axis-inhibits-metastasis-of-nasopharyngeal-carcinoma]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Wu Y, Jia Q, Tang Q, Deng H, He Y, Tang F</p>

<p>J Cancer. 2024. doi: 10.7150/jca.90574</p>

<p>Nasopharyngeal carcinoma (NPC) is a malignant tumor that is highly prevalent in Southeast China, and its metastasis remains an unresolved clinical problem. Ferroptosis, a type of nonapoptotic cell death, is a critical pathway in tumor metastasis. Berberine (BBR), a plant alkaloid, has been explored as a potential anti-NPC metastatic agent; however, the underlying mechanisms are unknown. Here, we showed that BBR exerted its anti-metastasis role by inhibiting system Xc-/GSH/GPX4 axis-driven ferroptosis. The present study demonstrated for the first time that BBR induced ferroptosis in NPC cells by increasing reactive oxygen species, lipid peroxidation and cellular Fe2+ and that the ferroptosis inhibitors Ferrostatin-1 and Deferoxamine mesylate rescued BBR-induced NPC cell death. Moreover, the ferroptotic characteristics of BBR-treated NPC cells were observed using transmission electron microscopy. Mechanistically, system Xc- (SLC7A11 and SLC3A2) and GSH levels were found to be suppressed after treatment with BBR. We demonstrated that the system Xc-/GSH/GPX4 axis was a critical mediator of BBR-induced ferroptosis. Furthermore, GPX4, a key inhibitor of lipid peroxidation, was greatly suppressed by BBR at both protein and mRNA levels. Molecular docking results showed a strong interaction between GPX4 and BBR. Notably, GPX4 overexpression reversed the effect of BBR-induced ferroptosis in NPC cells. Finally, BBR-mediated inhibition of NPC metastasis was validated in vivo using a mouse model. Taken together, our data suggest that BBR induced ferroptosis of NPC cells via suppressing the system Xc-/GSH/GPX4 axis, provides new insights into the mechanism of BBR anti-NPC metastasis.</p>
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				<pubDate><![CDATA[Fri, 12 Apr 2024 14:20:44 +0200]]></pubDate>
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			<item><title><![CDATA[Clonal gene signatures predict prognosis in mesothelioma and lung adenocarcinoma.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/clonal-gene-signatures-predict-prognosis-in-mesothelioma-and-lung-adenocarcinoma]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/clonal-gene-signatures-predict-prognosis-in-mesothelioma-and-lung-adenocarcinoma]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Lin Y, Burt BM, Lee HS, Nguyen TT, Jang HJ, Lee C, Hong W, Ripley RT, Amos CI, Cheng C</p>

<p>NPJ Precis Oncol. Feb 2024</p>

<p>Malignant pleural mesothelioma (MPM) is a rare but lethal pleural cancer with high intratumor heterogeneity (ITH). A recent study in lung adenocarcinoma has developed a clonal gene signature (ORACLE) from multiregional transcriptomic data and demonstrated high prognostic values and reproducibility. However, such a strategy has not been tested in other types of cancer with high ITH. We aimed to identify biomarkers from multi-regional data to prognostically stratify MPM patients. We generated a multiregional RNA-seq dataset for 78 tumor samples obtained from 26 MPM patients, each with one sample collected from a superior, lateral, and inferior region of the tumor. By integrating this dataset with the Cancer Genome Atlas MPM RNA-seq data, we selected 29 prognostic genes displaying high variability across different tumors but low ITH, which named PRACME (Prognostic Risk Associated Clonal Mesothelioma Expression). We evaluated PRACME in two independent MPM datasets and demonstrated its prognostic values. Patients with high signature scores are associated with poor prognosis after adjusting established clinical factors. Interestingly, the PRACME and the ORACLE signatures defined respectively from MPM and lung adenocarcinoma cross-predict prognosis between the two cancer types. Further investigation indicated that the cross-prediction ability might be explained by the high similarity between the two cancer types in their genomic regions with copy number variation, which host many clonal genes. Overall, our clonal signature PRACME provided prognostic stratification in MPM and this study emphasized the importance of multi-regional transcriptomic data for prognostic stratification based on clonal genes.</p>
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				<pubDate><![CDATA[Mon, 08 Apr 2024 10:14:01 +0200]]></pubDate>
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			<item><title><![CDATA[Cancer Pathways Targeted by Berberine: Role of microRNAs.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/cancer-pathways-targeted-by-berberine-role-of-micrornas]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/cancer-pathways-targeted-by-berberine-role-of-micrornas]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Ali M, Mishra D, Singh RP</p>

<p>Curr Med Chem. Jan 2024. doi: 10.2174/0109298673275121231228124031</p>

<p>Cancer is a complex and heterogeneous malignant disease. Due to its multifactorial nature, including progressive changes in genetic, epigenetic, transcript, and protein levels, conventional therapeutics fail to save cancer patients. Evidence indicates that dysregulation of microRNA (miRNA) expression plays a crucial role in tumorigenesis, metastasis, cell proliferation, differentiation, metabolism, and signaling pathways. Moreover, miRNAs can be used as diagnostic and prognostic markers and therapeutic targets in cancer. Berberine, a naturally occurring plant alkaloid, has a wide spectrum of biological activities in different types of cancers. Inhibition of cell proliferation, metastasis, migration, invasion, and angiogenesis, as well as induction of cell cycle arrest and apoptosis in cancer cells, is reported by berberine. Recent studies suggested that berberine regulates many oncogenic and tumor suppressor miRNAs implicated in different phases of cancer. This review discussed how berberine inhibits cancer growth and propagation and regulates miRNAs in cancer cells. And how berberine-mediated miRNA regulation changes the landscape of transcripts and proteins that promote or suppress cancer progression. Overall, the underlying molecular pathways altered by berberine and miRNA influencing the tumor pathophysiology will enhance our understanding to combat the malignancy.</p>
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				<pubDate><![CDATA[Thu, 29 Feb 2024 00:03:34 +0200]]></pubDate>
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			<item><title><![CDATA[Berberine improved the microbiota in lung tissue of colon cancer and reversed the bronchial epithelial cell changes caused by cancer cells.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberine-improved-the-microbiota-in-lung-tissue-of-colon-cancer-and-reversed-the-bronchial-epithelial-cell-changes-caused-by-cancer-cells]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberine-improved-the-microbiota-in-lung-tissue-of-colon-cancer-and-reversed-the-bronchial-epithelial-cell-changes-caused-by-cancer-cells]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Yang W, Yang T, Huang B, Chen Z, Liu H, Huang C</p>

<p>Heliyon. Jan 2024</p>

<p>The lung is a common organ for colon cancer metastasis, and the objective of this experiment was to explore the protective effect of berberine on lung tissue or alveolar epithelial cells induced by colon cancer.Thirty-six BALB/c nude mice were used to establish a xenograft model of colon cancer with the HT29&nbsp;cell line and were treated with berberine and probiotics. Human bronchial epithelial BEAS-2B cells were induced by conditioned medium (CM) from the colon cancer cell lines HT29 and RKO and were treated with berberine. Lung tissues were collected to detect the changes in the microbiota using 16S rDNA sequencing and the expression of inflammatory cytokines. The expression of E-cadherin and N-cadherin in BEAS-2B cells was detected by cellular immunofluorescence. The changes in cell proliferation were detected by the CCK-8 assay. Western blotting was used to detect E-cadherin, N-cadherin, collagen I, fibronectin, PDGF-β, and RAD51 expression in BEAS-2B cells.The richness and evenness of the microbiota in the lung tissues of mice with colon cancer were significantly lower than those of the control group. Berberine significantly increased the abundances of Bacteroidetes, Bacteroidia, Bacteroidales, Lactobacillaceae, Lactobacillus and Acinetobacter in the lung tissue of mice with colon cancer, with reduced abundances of Actinobacteria, Bacillales, Staphylococcaceae and Staphylococcus. Berberine or probiotics significantly increased the alpha diversity of the lung microbiota. Compared with probiotics, berberine significantly enhanced the abundance of microbiota involved in the metabolism of lysosomes, flavone and flavonol biosynthesis, glycosaminoglycan degradation, and glycosphingolipid biosynthesis-ganglio. Berberine increased IL-6 and IL-10 and decreased IL-17 and IFN-γ expression in lung tissue (P&nbsp;&gt;&nbsp;0.05), but berberine-probiotics significantly decreased IL-17 and IFN-γ and increased IL-10 expression (P&nbsp;&lt;&nbsp;0.05). Colon cancer cells could not induce BEAS-2B proliferation but decreased the expression of the epithelial marker E-cadherin and altered the expression of extracellular matrix-related proteins (collagen I, fibronectin, and PDGF-β), which were reversed by berberine. Berberine increased RAD51 expression in BEAS-2B cells, which had been decreased by HT29 and RKO CM treatment.Berberine can selectively regulate the abundance of some microbiomes of lung tissue in colon cancer, improve the inflammatory response in lung tissue, and antagonize the cancerous stimulation of colon cancer cells to lung tissue cells by regulating the bronchial epithelial cell phenotype, extracellular matrix remodelling and the expression of the repair gene RAD51.</p>
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				<pubDate><![CDATA[Thu, 29 Feb 2024 00:01:48 +0200]]></pubDate>
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			<item><title><![CDATA[Identification of Autophagy-Related Targets of Berberine against Non-Small Cell Lung Cancer and Their Correlation with Immune Cell Infiltration By Combining Network Pharmacology, Molecular Docking, and Experimental Verification.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/identification-of-autophagyrelated-targets-of-berberine-against-nonsmall-cell-lung-cancer-and-their-correlation-with-immune-cell-infiltration-by-combining-network-pharmacology-molecular-docking-and-experimental-verification]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/identification-of-autophagyrelated-targets-of-berberine-against-nonsmall-cell-lung-cancer-and-their-correlation-with-immune-cell-infiltration-by-combining-network-pharmacology-molecular-docking-and-experimental-verification]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Xu L</p>

<p>Crit Rev Immunol. 2023. doi: 10.1615/CritRevImmunol.2023049923</p>

<p>Non-small cell lung cancer (NSCLC) is the most common lung cancer type with high incidence. This study aimed to reveal the anti-NSCLC mechanisms of berberine and identify novel therapeutic targets.Berberine-related targets were acquired from SuperPred, SwissTargetPrediction, and GeneCards. NSCLC-re-lated targets were collected from GeneCards and DisGeNET. Differentially expressed genes (DEGs) were identified GEO database, UCSC Xena, and limma. GO and KEGG analyses were performed using clusterProfiler. Autophagy-related genes and transcriptional factors were collected from HADb and KnockTF, respectively. STRING and Cytoscape were used for PPI network analysis. Immune cell infiltration in NSCLC was assessed using CIBERSORT, and its correlation with autophagy-related targets was evaluated. Molecular docking was conducted using PyMOL and AutoDock. qRT-PCR and CCK-8 assay was used for in vitro verification.Thirty intersecting targets of berberine-related targets, NSCLC-related targets, and DEGs were obtained. GO and KEGG analyses revealed that the intersecting targets were mainly implicated in oxidative stress, focal adhesion, and cell-substrate junction, as well as AGE-RAGE, relaxin, FoxO, and estrogen signaling pathways. Significantly, CAPN1, IKBKB, and SIRT2 were identified as the foremost autophagy-related targets, and 21 corresponding transcriptional factors were obtained. PPI network analysis showed that CAPN1, IKBKB, and SIRT2 interacted with 50 other genes. Fifty immune cell types, such as B cells naive, T cells CD8, T cells CD4 naive, T cells follicular helper, and monocytes, were implicated in NSCLC pathogenesis, and CAPN1, IKBKB, and SIRT2 were related to immune cells. Molecular docking revealed the favorable binding activity of berberine with CAPN1, IKBKB, and SIRT2. In vitro assays showed lower CAPN1, IKBKB, and SIRT2 expression in NSCLC cells than that in normal cells. Notably, berberine inhibited the viability and elevated CAPN1, IKBKB, and SIRT2 expression in NSCLC cells.Berberine might treat NSCLC mainly by targeting CAPN1, IKBKB, and SIRT2.</p>
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				<pubDate><![CDATA[Mon, 11 Dec 2023 19:45:43 +0200]]></pubDate>
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			<item><title><![CDATA[Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/multiomic-analysis-of-malignant-pleural-mesothelioma-identifies-molecular-axes-and-specialized-tumor-profiles-driving-intertumor-heterogeneity]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/multiomic-analysis-of-malignant-pleural-mesothelioma-identifies-molecular-axes-and-specialized-tumor-profiles-driving-intertumor-heterogeneity]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Mangiante L, Alcala N, Sexton-Oates A, Di Genova A, Gonzalez-Perez A, Khandekar A, Bergstrom EN, Kim J, Liu X, Blazquez-Encinas R, Giacobi C, Le Stang N, Boyault S, Cuenin C, Tabone-Eglinger S, Damiola F, Voegele C, Ardin M, Michallet MC, Soudade L, Delhomme TM, Poret A, Brevet M, Copin MC, Giusiano-Courcambeck S, Damotte D, Girard C, Hofman V, Hofman P, Mouroux J, Cohen C, Lacomme S, Mazieres J, de Montpreville VT, Perrin C, Planchard G, Rousseau N, Rouquette I, Sagan C, Scherpereel A, Thivolet F, Vignaud JM, Jean D, Ilg AGS, Olaso R, Meyer V, Boland-Auge A, Deleuze JF, Altmuller J, Nuernberg P, Ibáñez-Costa A, Castaño JP, Lantuejoul S, Ghantous A, Maussion C, Courtiol P, Hernandez-Vargas H, Caux C, Girard N, Lopez-Bigas N, Alexandrov LB, Galateau-Salle F, Foll M, Fernandez-Cuesta L</p>

<p>Nat Genet. Mar 2023. doi: 10.1038/s41588-023-01321-1</p>

<p>Malignant pleural mesothelioma (MPM) is an aggressive cancer with rising incidence and challenging clinical management. Through a large series of whole-genome sequencing data, integrated with transcriptomic and epigenomic data using multiomics factor analysis, we demonstrate that the current World Health Organization classification only accounts for up to 10% of interpatient molecular differences. Instead, the MESOMICS project paves the way for a morphomolecular classification of MPM based on four dimensions: ploidy, tumor cell morphology, adaptive immune response and CpG island methylator profile. We show that these four dimensions are complementary, capture major interpatient molecular differences and are delimited by extreme phenotypes that-in the case of the interdependent tumor cell morphology and adapted immune response-reflect tumor specialization. These findings unearth the interplay between MPM functional biology and its genomic history, and provide insights into the variations observed in the clinical behavior of patients with MPM.</p>
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				<pubDate><![CDATA[Wed, 05 Apr 2023 10:08:08 +0200]]></pubDate>
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			<item><title><![CDATA[Multi-Target Potential of Berberine as an Antineoplastic and Antimetastatic Agent: A Special Focus on Lung Cancer Treatment]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/multitarget-potential-of-berberine-as-an-antineoplastic-and-antimetastatic-agent-a-special-focus-on-lung-cancer-treatment]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/multitarget-potential-of-berberine-as-an-antineoplastic-and-antimetastatic-agent-a-special-focus-on-lung-cancer-treatment]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Achi IT, Sarbadhikary P, George BP, Abrahamse H</p>

<p>Cells. Oct 2022</p>

<p>Despite therapeutic advancements, lung cancer remains the principal cause of cancer mortality in a global scenario. The increased incidence of tumor reoccurrence and progression and the highly metastatic nature of lung cancer are of great concern and hence require the investigation of novel therapies and/or medications. Naturally occurring compounds from plants serve as important resources for novel drugs for cancer therapy. Amongst these phytochemicals, Berberine, an alkaloid, has been extensively explored as a potential natural anticancer therapeutic agent. Several studies have shown the effectiveness of Berberine in inhibiting cancer growth and progression mediated via several different mechanisms, which include cell cycle arrest, inducing cell death by apoptosis and autophagy, inhibiting cell proliferation and invasion, as well as regulating the expression of microRNA, telomerase activity, and the tumor microenvironment, which usually varies for different cancer types. In this review, we aim to provide a better understanding of molecular insights of Berberine and its various derivative-induced antiproliferative and antimetastatic effects against lung cancer. In conclusion, the Berberine imparts its anticancer efficacy against lung cancers via modulation of several signaling pathways involved in cancer cell viability and proliferation, as well as migration, invasion, and metastasis.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Wed, 16 Nov 2022 11:47:49 +0200]]></pubDate>
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			<item><title><![CDATA[Berberine Inhibits FOXM1 Dependent Transcriptional Regulation of POLE2 and Interferes With the Survival of Lung Adenocarcinoma.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberine-inhibits-foxm1-dependent-transcriptional-regulation-of-pole2-and-interferes-with-the-survival-of-lung-adenocarcinoma]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/berberine-inhibits-foxm1-dependent-transcriptional-regulation-of-pole2-and-interferes-with-the-survival-of-lung-adenocarcinoma]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Ni L, Sun P, Fan X, Li Z, Ren H, Li J</p>

<p>Front Pharmacol. 2021. doi: 10.3389/fphar.2021.775514</p>

<p>Background: Berberine is one of the most interesting and promising natural anticancer drugs. POLE2 is involved in many cellular functions such as DNA replication and is highly expressed in a variety of cancers. However, the specific molecular mechanism of berberine interfering with POLE2 expression in lung adenocarcinoma (LUAD) is still unknown to a great extent. Method: The KEGG database (Release 91.0) and Gene Ontology (GO) category database were used for functional annotation of differentially expressed genes after berberine treatment. Reproducibility assessment using TCGA dataset. The biological functions of berberine in LUAD were investigated by a series of in vitro and in vivo experiments: MTT, colony formation, mouse xenograft and plasmid transfection. The molecular mechanisms of berberine were demonstrated by plasmid transfection, quantitative RT-PCR and Western blotting. Result: The elevated expression of FOXM1 and the high enrichment of DNA replication pathway were confirmed in LUAD by microarray and TCGA analysis, and were positively correlated with poor prognosis. Functionally, berberine inhibited the proliferation and survival of LUAD cell lines in vitro and in vivo. Mechanistically, berberine treatment down regulated the expression of FOXM1which closely related to survival, survival related genes in Cell cycle and DNA replication pathway, and significantly down regulated the expression of survival related POLE2. Interestingly, we found that the transcription factor FOXM1 could act as a bridge between berberine and POLE2. Conclusion: Berberine significantly inhibited LUAD progression via the FOXM1/POLE2, and FOXM1/POLE2 may act as a clinical prognostic factor and a therapeutic target for LUAD. Berberine may be used as a promising therapeutic candidate for LUAD patients.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Wed, 20 Apr 2022 11:26:25 +0200]]></pubDate>
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			<item><title><![CDATA[Effects of the MDM2 inhibitor Nutlin-3a on sensitivity of pancreatic cancer cells to berberine and modified berberines in the presence and absence of WT-TP53.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/effects-of-the-mdm2-inhibitor-nutlin3a-on-sensitivity-of-pancreatic-cancer-cells-to-berberine-and-modified-berberines-in-the-presence-and-absence-of-wttp53]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/effects-of-the-mdm2-inhibitor-nutlin3a-on-sensitivity-of-pancreatic-cancer-cells-to-berberine-and-modified-berberines-in-the-presence-and-absence-of-wttp53]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Abrams SL, Akula SM, Steelman LS, Follo ML, Cocco L, Ratti S, Martelli AM, Libra M, Falzone L, Candido S, Montalto G, Cervello M, Lombardi P, McCubrey JA</p>

<p>Adv Biol Regul. Jan 2022</p>

<p>Approaches to improve pancreatic cancer therapy are essential as this disease has a very bleak outcome. Approximately 80% of pancreatic cancers are pancreatic ductal adenocarcinomas (PDAC). A key regulatory gene frequently mutated (&sim;75%) in PDAC is the TP53 tumor suppressor gene which controls the transcription of multiple genes involved in cell cycle progression, apoptosis, cancer progression and other growth regulatory processes. The mouse double minute 2 homolog (MDM2) gene product is a nuclear-localized E3 ubiquitin ligase and negatively regulates the TP53 protein which results in its proteasomal degradation. Various MDM2 inhibitors have been isolated and examined in clinical trials, especially in patients with hematological malignancies. Nutlin-3a is one of the first MDM2 inhibitors isolated. Berberine (BBR) is a natural product found in many fruits and berries and used in traditional medicine for centuries. It has many biological effects, and some are anti-proliferative in nature. BBR may activate the expression of TP53 and inhibit cell cycle progression as well as other events important in cell growth. To understand more about the potential of compounds like BBR and chemical modified BBRs (NAX compounds) to sensitize PDAC cells to MDM2 inhibitors, we introduced either WT-TP53 or the pLXSN empty vector control into two PDAC cell lines, one lacking expression of TP53 (PANC-28) and one with gain-of-function mutant TP53 on both alleles (MIA-PaCa-2). Our results indicate that nutlin-3a was able to increase the sensitivity to BBR and certain NAX compounds. The effects of nutlin-3a were usually more substantial in those cells containing an introduced WT TP53 gene. These results highlight the importance of knowledge of the type of TP53 mutation that is present in cancer patients before the administration of drugs which function by stabilization of the TP53 protein.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Fri, 25 Mar 2022 12:46:50 +0200]]></pubDate>
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			<item><title><![CDATA[APR-246—The Mutant TP53 Reactivator—Increases the Effectiveness of Berberine and Modified Berberines to Inhibit the Proliferation of Pancreatic Cancer Cells]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/apr246the-mutant-tp53-reactivatorincreases-the-effectiveness-of-berberine-and-modified-berberines-to-inhibit-the-proliferation-of-pancreatic-cancer-cells]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/apr246the-mutant-tp53-reactivatorincreases-the-effectiveness-of-berberine-and-modified-berberines-to-inhibit-the-proliferation-of-pancreatic-cancer-cells]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>McCubrey JA, Abrams SL, Steelman LS, Cocco L, Ratti S, Martelli AM, Lombardi P, Gizak A, Duda P</p>

<p>Biomolecules. Feb 2022</p>

<p>Pancreatic ductal adenocarcinoma (PDAC) is the most common form of pancreatic cancer. In ~75% of PDAC, the tumor suppressor TP53 gene is mutated. Novel approaches to treat cancer involve compounds called mutant TP53 reactivators. They interact with mutant TP53 proteins and restore some of their growth suppressive properties, but they may also interact with other proteins, e.g., TP63 and TP73. We examined the ability of the TP53 reactivator APR-246 to interact with eleven modified berberine compounds (NAX compounds) in the presence and absence of WT-TP53 in two PDAC cell lines: the MIA-PaCa-2, which has gain of function (GOF) TP53 mutations on both alleles, and PANC-28, which lacks expression of the WT TP53 protein. Our results indicate the TP53 reactivator-induced increase in therapeutic potential of many modified berberines.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Fri, 25 Mar 2022 12:42:35 +0200]]></pubDate>
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			<item><title><![CDATA[An insight into the medicinal attributes of berberine derivatives: A review]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/an-insight-into-the-medicinal-attributes-of-berberine-derivatives-a-review]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/an-insight-into-the-medicinal-attributes-of-berberine-derivatives-a-review]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Gaba S, Saini A, Singh G, Monga V</p>

<p>Bioorg Med Chem. 05 2021</p>

<p>In the last few decades, traditional natural products have been the center of attention for the scientific community and exploration of their therapeutic abilities is proceeding perpetually. Berberine, with remarkable therapeutic diversity, is a plant derived isoquinoline alkaloid which is widely used as a traditional medicine in China. Berberine has been tackled as a fascinating pharmacophore to make great contributions to the discovery and development of new therapeutic agents against variegated diseases. Despite its tremendous therapeutic potential, clinical utility of this alkaloid was significantly compromised due to undesirable pharmacokinetic properties. To overcome this limitation, several structural modifications were performed on this scaffold to improve its therapeutic efficacy. The collective efforts of the community have achieved the tremendous advancements, bringing berberine to clinical use and discovering new therapeutic opportunities by structural modifications on the berberine scaffold. In this review, recent advancements in the medicinal chemistry of berberine and its derivatives in the last few years (2016-2020) have been compiled to represent inclusive data associated with various biological activities of this alkaloid. The comprehensive structure-activity relationship studies along with molecular modelling and mechanistic studies have also been summarized. This article would be highly helpful for the scientific community to get better insight into medicinal research of berberine and become a compelling guide for the rational design of berberine based compounds.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Tue, 31 Aug 2021 15:29:30 +0200]]></pubDate>
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			<item><title><![CDATA[Enhanced Clearance of Neurotoxic Misfolded Proteins by the Natural Compound Berberine and Its Derivatives.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/enhanced-clearance-of-neurotoxic-misfolded-proteins-by-the-natural-compound-berberine-and-its-derivatives]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/enhanced-clearance-of-neurotoxic-misfolded-proteins-by-the-natural-compound-berberine-and-its-derivatives]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Rusmini P, Cristofani R, Tedesco B, Ferrari V, Messi E, Piccolella M, Casarotto E, Chierichetti M, Cicardi ME, Galbiati M, Geroni C, Lombardi P, Crippa V, Poletti A</p>

<p>Int J Mol Sci. May 2020</p>

<p>Accumulation of misfolded proteins is a common hallmark of several neurodegenerative disorders (NDs) which results from a failure or an impairment of the protein quality control (PQC) system. The PQC system is composed by chaperones and the degradative systems (proteasome and autophagy). Mutant proteins that misfold are potentially neurotoxic, thus strategies aimed at preventing their aggregation or at enhancing their clearance are emerging as interesting therapeutic targets for NDs.We tested the natural alkaloid berberine (BBR) and some derivatives for their capability to enhance misfolded protein clearance in cell models of NDs, evaluating which degradative pathway mediates their action.We found that both BBR and its semisynthetic derivatives promote degradation of mutant androgen receptor (ARpolyQ) causative of spinal and bulbar muscular atrophy, acting mainly via proteasome and preventing ARpolyQ aggregation. Overlapping effects were observed on other misfolded proteins causative of amyotrophic lateral sclerosis, frontotemporal-lobar degeneration or Huntington disease, but with selective and specific action against each different mutant protein.BBR and its analogues induce the clearance of misfolded proteins responsible for NDs, representing potential therapeutic tools to counteract these fatal disorders.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Thu, 28 May 2020 19:32:42 +0200]]></pubDate>
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			<item><title><![CDATA[Abilities of berberine and chemically modified berberines to inhibit proliferation of pancreatic cancer cells.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/abilities-of-berberine-and-chemically-modified-berberines-to-inhibit-proliferation-of-pancreatic-cancer-cells]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/abilities-of-berberine-and-chemically-modified-berberines-to-inhibit-proliferation-of-pancreatic-cancer-cells]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Abrams SL, Follo MY, Steelman LS, Lertpiriyapong K, Cocco L, Ratti S, Martelli AM, Candido S, Libra M, Murata RM, Rosalen PL, Montalto G, Cervello M, Gizak A, Rakus D, Mao W, Lombardi P, McCubrey JA</p>

<p>Adv Biol Regul. 01 2019</p>

<p>Berberine (BBR) is a common nutraceutical consumed by millions worldwide. BBR has many different effects on human health, e.g., diabetes, diarrhea, inflammation and now more recently it has been proposed to have potent anti-cancer effects. BBR has been shown to suppress the growth of cancer cells more than normal cells. BBR has been proposed to exert its growth-inhibitory effects by many different biochemical mechanisms including: suppression of cell cycle progression, induction of reactive oxygen species, induction of apoptosis and autophagy and interactions with DNA potentially leading to DNA damage, and altered gene expression. Pancreatic cancer is a leading cancer worldwide associated with a poor prognosis. As our population ages, pancreatic cancer has an increasing incidence and will likely become the second leading cause of death from cancer. There are few truly-effective therapeutic options for pancreatic cancer. Surgery and certain chemotherapeutic drugs are used to treat pancreatic cancer patients. Novel approaches to treat pancreatic cancer patients are direly needed as they usually survive for less than a year after being diagnosed. In the following manuscript, we discuss the abilities of BBR and certain chemically-modified BBRs (NAX compounds) to suppress growth of pancreatic cancer cells.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Tue, 10 Mar 2020 20:43:12 +0200]]></pubDate>
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			<item><title><![CDATA[Abilities of berberine and chemically modified berberines to interact with metformin and inhibit proliferation of pancreatic cancer cells.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/abilities-of-berberine-and-chemically-modified-berberines-to-interact-with-metformin-and-inhibit-proliferation-of-pancreatic-cancer-cells]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/abilities-of-berberine-and-chemically-modified-berberines-to-interact-with-metformin-and-inhibit-proliferation-of-pancreatic-cancer-cells]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Akula SM, Candido S, Libra M, Abrams SL, Steelman LS, Lertpiriyapong K, Ramazzotti G, Ratti S, Follo MY, Martelli AM, Murata RM, Rosalen PL, Bueno-Silva B, Matias de Alencar S, Montalto G, Cervello M, Gizak A, Rakus D, Mao W, Lin HL, Lombardi P, McCubrey JA</p>

<p>Adv Biol Regul. 08 2019</p>

<p>Pancreatic cancer is devastating cancer worldwide with few if any truly effective therapies. Pancreatic cancer has an increasing incidence and may become the second leading cause of death from cancer. Novel, more effective therapeutic approaches are needed as pancreatic cancer patients usually survive for less than a year after being diagnosed. Control of blood sugar levels by the prescription drug metformin in diseases such as diabetes mellitus has been examined in association with pancreatic cancer. While the clinical trials remain inconclusive, there is hope that certain diets and medications may affect positively the outcomes of patients with pancreatic and other cancers. Other natural compounds may share some of the effects of metformin. One &quot;medicinal&quot; fruit consumed by millions worldwide is berberine (BBR). Metformin and BBR both activate AMP-activated protein kinase (AMPK) which is a key mediator of glucose metabolism. Glucose metabolism has been shown to be very important in cancer and its significance is increasing. In the following studies, we have examined the effects of metformin, BBR and a panel of modified BBRs (NAX compounds) and chemotherapeutic drugs on the growth of four different human pancreatic adenocarcinoma cell lines (PDAC). Interestingly, the effects of metformin could be enhanced by BBR and certain modified BBRs. Upon restoration of WT-TP53 activity in MIA-PaCa-2 cells, an altered sensitivity to the combination of certain NAX compounds and metformin was observed compared to the parental cells which normally lack WT-TP53. Certain NAX compounds may interact with WT-TP53 and metformin treatment to alter the expression of key molecules involved in cell growth. These results suggest a therapeutic approach by combining certain pharmaceutical drugs and nutraceuticals to suppress the growth of cancer cells.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Tue, 10 Mar 2020 20:42:19 +0200]]></pubDate>
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			<item><title><![CDATA[Janus nanocarrier-based co-delivery of doxorubicin and berberine weakens chemotherapy-exacerbated hepatocellular carcinoma recurrence]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/janus-nanocarrierbased-codelivery-of-doxorubicin-and-berberine-weakens-chemotherapyexacerbated-hepatocellular-carcinoma-recurrence]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/janus-nanocarrierbased-codelivery-of-doxorubicin-and-berberine-weakens-chemotherapyexacerbated-hepatocellular-carcinoma-recurrence]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Zhang F, Jia Y, Zheng X, Shao D, Zhao Y, Wang Z, Dawulieti J, Liu W, Sun M, Sun W, Pan Y, Cui L, Wang Y, He K, Zhang M, Li J, Dong WF, Chen L</p>

<p>Acta Biomater. Sep 2019</p>

<p>Despite the rapid progress which has been made in hepatocellular carcinoma (HCC) chemotherapeutics, recurrence of liver cancer still remains a barrier to achieve satisfying prognosis. Herein, we aimed to decipher the role of berberine (BER) in chemotherapy-exacerbated HCC repopulation via developing a nanocarrier co-deliveries doxorubicin (DOX) and BER to achieve a synergic effect in HCC treatment. The underlying fact of chemotherapy that promotes HCC repopulation was firstly examined and corroborated by clinical samples and murine repopulation model. Then, hyaluronic acid (HA)-conjugated Janus nanocarrier (HA-MSN@DB) was developed to load DOX and BER simultaneously. The HCC targeting efficiency, pH-controlled drug-release and anti-cancer property of HA-MSN@DB were assessed in CD44-overexpressed HCCs and normal liver cells. Magnet resonance imaging, bio-distribution, biocompatibility, tumor and recurrence inhibition studies were performed in H22 tumor-bearing mice. BER significantly reduced doxorubicin (DOX)-triggered HCC repopulation in vitro and in vivo through inhibiting Caspase-3-iPLA2-COX-2 pathway. The delivery of HA-MSN@DB into HCCs through CD44 receptor-mediated targeting effect was demonstrated. The controlled release of DOX and BER in response to acidic tumor microenvironment was validated. Importantly, HA-MSN@DB drastically enhanced the antitumor activity of DOX and suppressed DOX-exacerbated HCC repopulation in vitro and in vivo. Furthermore, HA-MSN@DB exhibited enhanced tumor accumulation and biocompatibility. Our findings revealed the pivotal role of BER in overcoming chemotherapy-exacerbated HCC repopulation through Caspase-3-iPLA2-COX-2 pathway, thereby providing a promising and stable nanocarrier integrating DOX and BER for effective HCC chemotherapy without repopulation. Statement of Significance In this work, we have first demonstrated the fact that berberine (Ber) reduces chemotherapy-exacerbated HCC recurrence and studied its mechanism by the aid of a doxorubicin-induced mice HCC relapse model. We then developed a promising strategy that simultaneously inhibits HCC and its recurrence with an HCC-targeted co-delivery nanocarrier HA-MSN@DB and revealed that such an inhibition was related with the suppression of Caspase-3-iPLA2-COX-2 pathway by berberine.</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Tue, 01 Oct 2019 06:03:27 +0200]]></pubDate>
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			<item><title><![CDATA[Berberine: new perspectives for old remedies.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/cat/publications/berberine-new-perspectives-for-old-remedies]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/cat/publications/berberine-new-perspectives-for-old-remedies]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Tillhon M, Guamán Ortiz LM, Lombardi P, Scovassi AI</p>

<p>Biochem Pharmacol. 2012</p>

<p>Chemical compounds derived from plants have been used since the origin of human beings to counteract a number of diseases. Among them, the natural isoquinoline alkaloid berberine has been employed in Ayurvedic and Chinese Medicine for hundreds of years with a wide range of pharmacological and biochemical effects. More recently, a growing body of reports supports the evidence that berberine has anticancer effects, being able to block the proliferation of and to kill cancer cells. This review addresses the properties and therapeutic use of berberine and focuses on the recent advances as promising anticancer drug lead.</p>

<p>doi: 10.1016/j.bcp.2012.07.018S0006-2952(12)00500-X</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Mon, 01 Jul 2019 14:28:49 +0200]]></pubDate>
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			<item><title><![CDATA[Antitumor effect of novel berberine derivatives in breast cancer cells.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/cat/publications/antitumor-effect-of-novel-berberine-derivatives-in-breast-cancer-cells]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/cat/publications/antitumor-effect-of-novel-berberine-derivatives-in-breast-cancer-cells]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Pierpaoli E, Arcamone AG, Buzzetti F, Lombardi P, Salvatore C, Provinciali M</p>

<p>Biofactors 2013</p>

<p>Breast cancer is the most common malignancy and the most common cause of cancer death in elderly women. Chemoprevention with dietary compounds and their synthetic analogs has emerged as an attractive strategy to prevent carcinogenic progression to invasive cancer. In this study, we investigated the efficacy of some new synthetic derivatives of berberine, a phytochemical isolated from Barberry and other plants, to induce growth arrest of HER-2/neu overexpressing SK-BR-3 breast cancer cells. Supplementation with berberine or with the synthetic derivatives NAX012, NAX013, NAX014, and NAX035 exerted a dose- and time-dependent inhibition of SK-BR-3 cell viability, with a greater effectiveness of NAX012 and NAX014 compounds with respect to berberine. This cytotoxic effect was related to an increased number of apoptotic cells that reached 71.6% and 68.4% after 72 h treatment with 50 &micro;M of NAX012 and NAX014, respectively, compared with 44.2% of berberine. Real-time PCR analyses showed that berberine, NAX012 and NAX014 compounds increased the expression of some cell-cycle checkpoint molecules involved in cell senescence such as p53, p21(WAF1) , p16(INK4a) , and PAI-1, already after 24 h of 50 &micro;M treatments. Furthermore, berberine, NAX012 and NAX014, all reduced both HER-2/neu expression and phosphorylation on tumor cells, the NAX014 compound showing the higher effectiveness. These results provide novel information on the mechanisms involved in the anticancer effects of berberine and demonstrate the greater effectiveness of NAX012 and NAX014 analogs in inducing apoptosis and cellular senescence in HER-2/neu overexpressing tumor cell lines.</p>

<p>doi: 10.1002/biof.1131</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Mon, 01 Jul 2019 14:28:31 +0200]]></pubDate>
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			<item><title><![CDATA[Berberine acts as a natural inhibitor of Wnt/β-catenin signaling--identification of more active 13-arylalkyl derivatives.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/cat/publications/berberine-acts-as-a-natural-inhibitor-of-wntcatenin-signalingidentification-of-more-active-13arylalkyl-derivatives]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/cat/publications/berberine-acts-as-a-natural-inhibitor-of-wntcatenin-signalingidentification-of-more-active-13arylalkyl-derivatives]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Albring KF, Weidemüller J, Mittag S, Weiske J, Friedrich K, Geroni MC, Lombardi P, Huber O</p>

<p>Biofactors 2013</p>

<p>Aberrant activation of the canonical Wnt/β-catenin signaling pathway has been reported for numerous tumors of different origins. In most cases, mutations in components of the Wnt signaling pathway or in β-catenin itself were detected which ultimately induce a genetic program that promotes cell proliferation and attenuates apoptosis. Thus, targeting of Wnt/β-catenin signaling is of specific therapeutic interest. Herein, we investigated the plant-derived isoquinoline alkaloid berberine, which has been reported to have anticancer activity, and synthetic 13-arylalkyl derivatives thereof for their effects on Wnt/β-catenin signaling. Berberine did not show major effects on viability of HEK-293 embryonic kidney and HCT116 colon carcinoma cells and was not toxic in concentrations up to 20 &micro;M. Berberine inhibited β-catenin transcriptional activity and attenuated anchorage-independent growth. As a result of berberine treatment, cellular levels of active β-catenin were reduced concomitant with an increase in the expression of E-cadherin. However, in unstimulated cells, the effects on β-catenin levels were low. A screen of synthetic 13-arylalkyl berberine derivatives identified compounds exhibiting activities superior to those of the naturally occurring parent substance with more than 100-fold lower EC50 values for Wnt-repression. Thus, berberine and its synthetic derivatives represent potential therapeutic agents to inhibit Wnt/β-catenin signaling in tumorigenesis.</p>

<p>doi: 10.1002/biof.1133</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Mon, 01 Jul 2019 14:26:14 +0200]]></pubDate>
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			<item><title><![CDATA[Multiple effects of berberine derivatives on colon cancer cells.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/cat/publications/multiple-effects-of-berberine-derivatives-on-colon-cancer-cells]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/cat/publications/multiple-effects-of-berberine-derivatives-on-colon-cancer-cells]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Guamán Ortiz LM, Tillhon M, Parks M, Dutto I, Prosperi E, Savio M, Arcamone AG, Buzzetti F, Lombardi P, Scovassi AI</p>

<p>Biomed Res Int. 2014</p>

<p>The pharmacological use of the plant alkaloid berberine is based on its antibacterial and anti-inflammatory properties; recently, anticancer activity has been attributed to this compound. To exploit this interesting feature, we synthesized three berberine derivatives, namely, NAX012, NAX014, and NAX018, and we tested their effects on two human colon carcinoma cell lines, that is, HCT116 and SW613-B3, which are characterized by wt and mutated p53, respectively. We observed that cell proliferation is more affected by cell treatment with the derivatives than with the lead compound; moreover, the derivatives proved to induce cell cycle arrest and cell death through apoptosis, thus suggesting that they could be promising anticancer drugs. Finally, we detected typical signs of autophagy in cells treated with berberine derivatives.</p>

<p>doi: 10.1155/2014/924585</p>
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				<pubDate><![CDATA[Mon, 01 Jul 2019 14:25:00 +0200]]></pubDate>
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			<item><title><![CDATA[Role of 13-(di)phenylalkyl berberine derivatives in the modulation of the activity of human topoisomerase IB.]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/cat/publications/role-of-13diphenylalkyl-berberine-derivatives-in-the-modulation-of-the-activity-of-human-topoisomerase-ib]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/cat/publications/role-of-13diphenylalkyl-berberine-derivatives-in-the-modulation-of-the-activity-of-human-topoisomerase-ib]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>Vieira S, Castelli S, Falconi M, Takarada J, Fiorillo G, Buzzetti F, Lombardi P, Desideri A</p>

<p>Int J Biol Macromol. 2015</p>

<p>Topoisomerases IB are anticancer and antimicrobial targets whose inhibition by several natural and non-natural compounds has been documented. The inhibition effect by berberine and some 13-(di)phenylalkyl berberine derivatives has been tested towards human topoisomerase IB. Derivatives belonging to the 13-diphenylalkyl series display an efficient inhibition of the DNA relaxation and cleavage step, that increases upon pre-incubation with the enzyme. The religation step of the enzyme catalytic cycle is not affected by compounds and only slightly upon pre-incubation. The binding of the protein to the DNA substrate occurs also in the presence of the compounds, as monitored by a DNA shift assay, indicating that the compounds are not able to inhibit the formation of the enzyme-DNA complex but that they act as catalytic inhibitors.</p>

<p>doi: 10.1016/j.ijbiomac.2015.02.051S0141-8130(15)00155-5</p>
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				<pubDate><![CDATA[Mon, 01 Jul 2019 14:24:41 +0200]]></pubDate>
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			<item><title><![CDATA[Effects of berberine, curcumin, resveratrol alone and in combination with chemotherapeutic drugs and signal transduction inhibitors on cancer cells-Power of nutraceuticals]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/cat/publications/effects-of-berberine-curcumin-resveratrol-alone-and-in-combination-with-chemotherapeutic-drugs-and-signal-transduction-inhibitors-on-cancer-cellspower-of-nutraceuticals]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/cat/publications/effects-of-berberine-curcumin-resveratrol-alone-and-in-combination-with-chemotherapeutic-drugs-and-signal-transduction-inhibitors-on-cancer-cellspower-of-nutraceuticals]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>McCubrey JA, Abrams SL, Lertpiriyapong K, Cocco L, Ratti S, Martelli AM, Candido S, Libra M, Murata RM, Rosalen PL, Lombardi P, Montalto G, Cervello M, Gizak A, Rakus D, Steelman LS</p>

<p>Adv Biol Regul. Jan 2018</p>

<p>Over the past fifty years, society has become aware of the importance of a healthy diet in terms of human fitness and longevity. More recently, the concept of the beneficial effects of certain components of our diet and other compounds, that are consumed often by different cultures in various parts of the world, has become apparent. These &quot;healthy&quot; components of our diet are often referred to as nutraceuticals and they can prevent/suppress: aging, bacterial, fungal and viral infections, diabetes, inflammation, metabolic disorders and cardiovascular diseases and have other health-enhancing effects. Moreover, they are now often being investigated because of their anti-cancer properties/potentials. Understanding the effects of various natural products on cancer cells may enhance their usage as anti-proliferative agents which may be beneficial for many health problems. In this manuscript, we discuss and demonstrate how certain nutraceuticals may enhance other anti-cancer drugs to suppress proliferation of cancer cells.</p>

<p>DOI:&nbsp;<a href="https://doi.org/10.1016/j.jbior.2017.09.012" ref="aid_type=doi" target="_blank">10.1016/j.jbior.2017.09.012</a></p>
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				<pubDate><![CDATA[Mon, 01 Jul 2019 14:23:26 +0200]]></pubDate>
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			<item><title><![CDATA[BERMES project seeks to develop a new cure for Malignant Mesothelioma]]></title>
				<link><![CDATA[http://bermesproject.eu/en/publications/en/publications/bermes-project-of-aromics-receives]]></link>
				<guid><![CDATA[http://bermesproject.eu/en/publications/en/publications/bermes-project-of-aromics-receives]]></guid>
				<category><![CDATA[Publications]]></category>
				<description><![CDATA[<p>The European Commission has allocated, through the H2020-EIC-SMEInst-2018-2020-Phase 2 program, &nbsp;a total of 1,085.659&euro; to the BERMES project of Aromics, the objective of which is to complete the regulatory pre-clinical stage in order to begin studies in humans of the drug NAX035 for malignant mesothelioma, an aggressive and highly resistant cancer linked to asbestos exposure</p>
]]></description>
				
					
				
				<pubDate><![CDATA[Tue, 12 Mar 2019 15:52:06 +0200]]></pubDate>
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